Index

A

after_stream() (morphocut.core.Node method)

Archive (class in morphocut.contrib.ecotaxa) archive_fn (morphocut.contrib.ecotaxa.EcotaxaObject attribute)

B

Batch (class in morphocut.batch) BatchedPipeline (class in morphocut.batch)

BinomialFilter() (in module morphocut.filters) BioformatsReader() (in module morphocut.pims) buffered_generator() (in module morphocut.utils)

C

CalculateZooProcessFeatures() (in module morphocut.contrib.zooprocess) Call (class in morphocut.core)

consume() (morphocut.utils.StreamEstimator method) copy() (morphocut.core.StreamObject method)

D

data (morphocut.core.StreamObject attribute) default_mode (morphocut.contrib.ecotaxa.EcotaxaObject attribute)

draw_scalebar() (in module morphocut.scalebar) DrawScalebar() (in module morphocut.scalebar)

E

EcotaxaObject (class in morphocut.contrib.ecotaxa) EcotaxaReader() (in module morphocut.contrib.ecotaxa) EcotaxaWriter() (in module morphocut.contrib.ecotaxa)

Enumerate() (in module morphocut.stream) ExponentialSmoothingFilter() (in module morphocut.filters) ExtractROI() (in module morphocut.image)

F

Filter (class in morphocut.stream) FilterVariables() (in module morphocut.stream) Find() (in module morphocut.file)

FindRegions() (in module morphocut.image) FlowCamObject (class in morphocut.integration.flowcam) FlowCamReader() (in module morphocut.integration.flowcam) Format() (in module morphocut.str)

G

get_image() (morphocut.contrib.ecotaxa.EcotaxaObject method) get_label() (morphocut.core.Call method)

Glob() (in module morphocut.file) Gray2RGB() (in module morphocut.image)

H

HDF5Writer() (in module morphocut.hdf5)

I

image (morphocut.image.RegionProperties property) (morphocut.integration.flowcam.FlowCamObject property) ImageProperties() (in module morphocut.image) ImageReader() (in module morphocut.image)

ImageStats() (in module morphocut.image) ImageWriter() (in module morphocut.image) index_fn (morphocut.contrib.ecotaxa.EcotaxaObject attribute) is_raspberrypi() (in module morphocut.integration.raspi)

L

locals() (morphocut.core.Pipeline method)

M

mask (morphocut.integration.flowcam.FlowCamObject property) MaxFilter() (in module morphocut.filters) MeanFilter() (in module morphocut.filters) MedianFilter() (in module morphocut.filters) MemberNotFoundError meta (morphocut.contrib.ecotaxa.EcotaxaObject attribute) MinFilter() (in module morphocut.filters) MJPEGStreamer (class in morphocut.mjpeg_streamer) module morphocut.batch morphocut.contrib.ecotaxa morphocut.contrib.zooprocess morphocut.core morphocut.file morphocut.filters morphocut.hdf5 morphocut.image morphocut.integration.flowcam morphocut.integration.raspi morphocut.mjpeg_streamer morphocut.pims morphocut.scalebar morphocut.stat morphocut.str morphocut.stream morphocut.torch morphocut.utils morphocut.batch module morphocut.contrib.ecotaxa module

morphocut.contrib.zooprocess module morphocut.core module morphocut.file module morphocut.filters module morphocut.hdf5 module morphocut.image module morphocut.integration.flowcam module morphocut.integration.raspi module morphocut.mjpeg_streamer module morphocut.pims module morphocut.scalebar module morphocut.stat module morphocut.str module morphocut.stream module morphocut.torch module morphocut.utils module

N

n_remaining_hint (morphocut.core.StreamObject attribute)

name (morphocut.core.Variable attribute) Node (class in morphocut.core)

O

Output() (in module morphocut.core)

P

Pack() (in module morphocut.stream) ParallelPipeline (class in morphocut.parallel) parent (morphocut.core.Variable attribute) Parse() (in module morphocut.str) PiCameraReader() (in module morphocut.integration.raspi) Pipeline (class in morphocut.core)

prepare_input() (morphocut.core.Node method) prepare_output() (morphocut.core.Node method) PrintObjects() (in module morphocut.stream) Profile (class in morphocut.profile) Progress() (in module morphocut.stream) PyTorch() (in module morphocut.torch)

R

read_member() (morphocut.contrib.ecotaxa.Archive method) (morphocut.contrib.ecotaxa.TarArchive method) (morphocut.contrib.ecotaxa.ZipArchive method) regionprop2zooprocess() (in module morphocut.contrib.zooprocess) RegionProperties (class in morphocut.image)

RescaleIntensity() (in module morphocut.image) ReturnOutputs() (in module morphocut.core) RGB2Gray() (in module morphocut.image) run() (morphocut.core.Pipeline method) RunningMedian() (in module morphocut.stat)

S

Slice() (in module morphocut.stream) Stream (in module morphocut.core) stream_groupby() (in module morphocut.utils)

StreamBuffer() (in module morphocut.stream) StreamEstimator (class in morphocut.utils) StreamObject (class in morphocut.core)

T

TarArchive (class in morphocut.contrib.ecotaxa) ThresholdConst() (in module morphocut.image) to_dict() (morphocut.core.StreamObject method) transform() (morphocut.core.Call method)

transform_stream() (morphocut.batch.BatchedPipeline method) (morphocut.core.Node method) (morphocut.core.Pipeline method) (morphocut.stream.Filter method)

U

UnknownArchiveError

Unpack() (in module morphocut.stream)

V

Variable (class in morphocut.core)

VideoReader() (in module morphocut.pims)

Z

ZipArchive (class in morphocut.contrib.ecotaxa)